- Class: 2
- Architecture: 2.60:Sandwich
- Topology: 2.60.410:Peptidoglycan synthesis regulatory factor (PBP3), Domain 2
- Homology: 2.60.410.10:D-Ala-D-Ala carboxypeptidase, C-terminal domain
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1hd8 | [A] | [A] | [A] | 2.3 | ||||
1nj4 | [A] | [A] | [A] | 1.9 | ||||
1nzo | [A] | [A] | [A] | 1.85 | BME:BETA-MERCAPTOETHANOL | |||
1nzu | [A] | [A] | [A] | 2 | BME:BETA-MERCAPTOETHANOL | |||
1sdn | [A] | [A] | [A] | 2.5 | HG:MERCURY (II) ION | |||
1xp4 | [A] | [A] | [A] | 2.8 | IOD:IODIDE ION MSE:SELENOMETHIONINE SO4:SULFATE ION | |||
1z6f | [A] | [A] | [A] | 1.6 | BO9:N1-[(1R)-1-(DIHYDROXYBORYL)ETHYL]-N2-[(TERT-BUTOXYCARBONYL)-D-GAMMA-GLUTAMYL]-N6-[(BENZYLOXY)CARBONYL-L-LYSINAMIDE GOL:GLYCEROL | |||
3a3j | [A] | [A] | [A] | 2.15 | SO4:SULFATE ION | |||
3beb | [A] | [A] | [A] | 2 | GOL:GLYCEROL HJ3:(2R,4S)-2-[(1R)-1-{[(6S)-6-AMINO-6-CARBOXYHEXANOYL]AMINO}-2-OXOETHYL]-5,5-DIMETHYL-1,3-THIAZOLIDINE-4-CARBOXYLIC ACID | |||
3bec | [A] | [A] | [A] | 1.6 | GOL:GLYCEROL HJ2:(2R)-2-[(R)-{[(6S)-6-AMINO-6-CARBOXYHEXANOYL]AMINO}(CARBOXY)METHYL]-5-METHYL-3,6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLIC ACID | |||
3it9 | [A2] | [A2] | [A2] | 2.1 | FRU:BETA-D-FRUCTOFURANOSE GLC:ALPHA-D-GLUCOPYRANOSE SO4:SULFATE ION | |||
3ita | [A] | [A] | [A] | 1.8 | AIC:(2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID AIX:(2R,4S)-2-[(1R)-1-{[(2R)-2-AMINO-2-PHENYLACETYL]AMINO}-2-OXOETHYL]-5,5-DIMETHYL-1,3-THIAZOLIDINE-4-CARBOXYLICACID SO4:SULFATE ION | |||
3itb | [A] | [A] | [A] | 1.8 | AMV:METHYL 2-ACETAMIDO-3-O-[(1R)-1-CARBOXYETHYL]-2-DEOXY-BETA-D-GLUCOPYRANOSIDE DAL:D-ALANINE FGA:GAMMA-D-GLUTAMIC ACID FRU:BETA-D-FRUCTOFURANOSE GLC:ALPHA-D-GLUCOPYRANOSE SO4:SULFATE ION | |||
3mzd | [A] | [A] | [A] | 1.9 | CXV:(2R,4S)-2-[(1S)-1-({[3-(2-CHLOROPHENYL)-5-METHYL-1,2-OXAZOL-4-YL]CARBONYL}AMINO)-2-OXOETHYL]-5,5-DIMETHYL-1,3-THIAZOLIDINE-4-CARBOXYLIC ACID GOL:GLYCEROL | |||
3mze | [A] | [A] | [A] | 2.1 | 1QL:(2R)-5-[(CARBAMOYLOXY)METHYL]-2-{(1S)-1-METHOXY-2-OXO-1-[(THIOPHEN-2-YLACETYL)AMINO]ETHYL}-3,6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLIC ACID GOL:GLYCEROL | |||
3mzf | [A] | [A] | [A] | 1.5 | GOL:GLYCEROL IM2:(5R)-5-[(1S,2R)-1-FORMYL-2-HYDROXYPROPYL]-3-[(2-{[(E)-IMINOMETHYL]AMINO}ETHYL)SULFANYL]-4,5-DIHYDRO-1H-PYRROLE-2-CARBOXYLIC ACID | |||
4drt | [A] | [A] | [A] | 2 | CL:CHLORIDE ION MSE:SELENOMETHIONINE NA:SODIUM ION | |||
4k91 | [A] | [A] | [A] | 2.05 | SIN:SUCCINIC ACID | |||
5j8x | [A] | [A] | [A] | 2.53 | OK3:(4~{R})-4-[[4-(AMINOMETHYL)PHENYL]CARBONYLAMINO]-3,3-BIS(OXIDANYL)-2-OXA-3-BORANUIDABICYCLO[4.4.0]DECA-1(10),6,8-TRIENE-10-CARBOXYLIC ACID |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA